Teacher Notes
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Teacher Notes![]() Amino Acids and ProteinsGeneral, Organic and Biological Chemistry KitMaterials Included In Kit
Albumin, 2%, 300 mL*†
Ammonium sulfate solution, (NH4)2SO4, saturated, 400 mL¥ Arginine, 1%, 50 mL*‡ Biuret test solution, 200 mL§ Casein, 2%, 75 mL*† Copper sulfate solution, CuSO4, 0.1 M, 30 mL¥ Cysteine, 1%, 50 mL*‡ Gelatin, 2%, 75 mL*† Hydrochloric acid, HCl, 3 M, 125 mL¥ Isopropyl alcohol, (CH3)2CHOH, 50 mL¥ α-Naphthol, 0.1% in ethyl alcohol, 30 mL§ Nitric acid, HNO3, 3 M, 125 mL§ Silver nitrate solution, AgNO3, 0.1 M, 30 mL¥ Sodium hydroxide, NaOH, 3 M, 175 mL§ Sodium hypochlorite (bleach), NaOCl, 5%, 475 mL§ Sodium nitroferricyanide, Na2Fe(CN)5NO•H2O, 2%, 100 mL*§ Tyrosine, 1%, 50 mL*‡ Pipets, Beral-type, graduated, 150–200 *See Prelab Preparation. †Protein solutions ‡Amino acid solutions §Testing solutions ¥Reagents for protein denaturation Additional Materials Required
Water, distilled or deionized
Beakers, 50-, 400- and 600-mL, 12 each Boiling stones Erlenmeyer flasks, 125-mL, 12 Filter paper and funnels, 12 Hot plates, 2–3 (to share) Stirring rods, 12 Test tubes, medium, 15 x 150 mm, 12 Test tubes, small, 13 x 100 mm, 84 Test tube clamps, 12 Test tube racks, 12 Thermometers, 12 Wash bottles, 12 Prelab PreparationFor best results, prepare protein and amino acid solutions within one week of use. Cap the bottles and shake gently to dissolve—vigorous shaking may cause foaming and denature the proteins.
Safety PrecautionsBiuret solution contains copper sulfate, which is moderately toxic by ingestion, and sodium hydroxide, which is corrosive to eye and body tissue. α-Naphthol is slightly toxic by ingestion, inhalation and skin absorption and is a body tissue irritant. α-Naphthol solution contains ethyl alcohol and is a flammable liquid—avoid contact with flames or other sources of ignition. Hydrochloric acid, nitric acid, sodium hydroxide and sodium hypochlorite solutions are corrosive liquids and can cause skin burns. Sodium nitroferricyanide is highly toxic by ingestion and inhalation. Do not allow this solution to come in contact with acids. Do not heat the solution. Dispense and use sodium nitroferricyanide in the hood or in a wellventilated lab only. Avoid exposure of all chemicals to eyes and skin. Wear chemical splash goggles, chemical-resistant gloves and a lab coat or chemical-resistant apron. A solution of sodium hypochlorite may be used for oxidizing sodium nitroferricyanide test solutions in Part A. Sodium hypochlorite and sodium nitroferricyanide will generate toxic gases upon reaction with concentrated strong acids. Please consult current Safety Data Sheets for additional safety, handling and disposal information. Remind students to wash their hands thoroughly with soap and water before leaving the laboratory. DisposalConsult your current Flinn Scientific Catalog/Reference Manual for general guidelines and specific procedures, and review all federal, state and local regulations that may apply, before proceeding. Protein and amino acid solutions may be rinsed down the drain with excess water according to Flinn Suggested Disposal Method #26b. To avoid potential side reactions due to mixing incompatible chemicals in waste containers, test mixtures in Part A require segregation, neutralization or oxidation prior to waste collection and disposal. Sodium nitroferricyanide generates a toxic gas in contact with concentrated strong acids and is a characteristic hazardous waste. This may be prevented by oxidizing test mixtures containing sodium nitroferricyanide with bleach (sodium hypochlorite solution) as part of the laboratory procedure. Oxidation of sodium nitroferricyanide converts it to cyanate salts, which are generally considered nonhazardous. The pH of the sodium hypochlorite solution in the “waste beaker” must be kept basic (pH >10) during this process to avoid generating chlorine gas. This is accomplished in Part A by first adding the biuret test mixtures to the waste beaker—the pH of biuret test solution is 14 (it is extremely corrosive). Lab Hints
Correlation to Next Generation Science Standards (NGSS)†Science & Engineering PracticesAsking questions and defining problemsPlanning and carrying out investigations Analyzing and interpreting data Engaging in argument from evidence Obtaining, evaluation, and communicating information Disciplinary Core IdeasMS-PS1.B: Chemical ReactionsHS-PS1.B: Chemical Reactions Crosscutting ConceptsCause and effectPatterns Performance ExpectationsMS-PS1-2. Analyze and interpret data on the properties of substances before and after the substances interact to determine if a chemical reaction has occurred. Answers to Prelab Questions
Sample DataLaboratory Report {14049_Data_Table_2}
Part B. Protein Denaturation and Salting-Out Effect of Strong Acid
{14049_Data_Table_3}
Effect of Inorganic and Organic Additives (Albumin)
{14049_Data_Table_4}
Effect of Heat (Albumin)
{14049_Data_Table_5}
Salting-Out with Ammonium Sulfate
{14049_Data_Table_6}
Answers to Questions
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Student Pages
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Student Pages![]() Amino Acids and ProteinsGeneral, Organic and Biological Chemistry KitIntroductionWhat are the roles of amino acids in the structure and properties of proteins? Investigate the properties of proteins and amino acids and learn how these biological molecules can be identified. The effects of chemicals and environmental factors on the physical properties of proteins can help us understand their structures and how proteins fulfill their vital biological functions. Concepts
BackgroundProteins represent the most diverse class of biological compounds within cells. It is estimated that a single bacteria cell contains more than 3,000 different proteins. The word protein is derived from the Greek word “proteios,” meaning first or primary. Proteins are of primary importance in terms of both their occurrence within cells and their function in cell activities. The functions of proteins are at the center of life itself—proteins catalyze our metabolic reactions, carry oxygen to our body tissues, protect the body from infection and maintain cell structure. {14049_Background_Figure_1_Formation of a peptide linkage}
All proteins are made from about 20 different, naturally occurring amino acids, which can be arranged in an almost infinite number of ways. The primary structure of a protein is determined by the number and identity of amino acids and the order in which they are joined together. Higher levels of protein structure (called secondary, tertiary and quaternary structures) result as the polypeptide chains form ribbons, sheets and coils that then fold in on themselves to form more stable three-dimensional arrangements. In addition to their reactive amino and carboxylic acid functional groups, amino acids contain a third group of atoms, called the side chain (shown as “R” groups in Figure 1). Although not involved in peptide bond formation, the side chains may contain other functional groups that influence both the structure and function of proteins. Hydrophobic amino acids contain nonpolar side chains, such as large hydrocarbon groups. Protein molecules often fold in on themselves so that the hydrophobic amino acids are tucked away in the interior of the structure. This reduces unfavorable contact between the nonpolar side chains and polar water molecules within cells. Amino acids are classified as hydrophilic if they contain polar side chains that are able to form hydrogen bonds. Hydrophilic amino acids are often found at the “active” sites in enzymes, where they bind to small molecules and catalyze chemical reactions. Finally, ionic amino acids contain extra acidic and basic groups in their side chains; at physiological pH these side chains exist in charged, ionic forms. Oppositely charged side chains form so-called “salt bridges” that stabilize the three-dimensional structure of proteins. Classification Tests for Proteins and Amino Acids Proteins can be identified using a simple color test based on the reaction of their polypeptide backbones with copper ions in basic solution. Compounds containing two or more peptide linkages react with copper sulfate to form a purple complex. This is called the biuret test. The purple product is due to coordination of peptide nitrogen atoms with copper ions. The amount of product that is formed and the intensity of the purple color depend on the nature of the protein and how much protein is present. Specific amino acid residues in proteins can also be identified using chemical tests based on reactions of their different side chains. The amino acids that will be studied in this lab include tyrosine, an aromatic amino acid; arginine, which has a basic side chain; and cysteine, which has a sulfur-containing side chain (see Figure 2). {14049_Background_Figure_2_Structures of tyrosine, arginine and cysteine}
Structure and Function {14049_Background_Figure_3_Forces influencing protein structure}
Protein folding is the name given to the process by which proteins naturally coil around or fold in on themselves in order to form stable, three-dimensional structures. Since every protein has a unique sequence of amino acids, every protein also has a unique shape—called its native structure—that makes the protein both stable and functional. Materials
Albumin, 2%, 25 mL*
Ammonium sulfate solution, (NH4)2SO4, saturated, 25 mL§ Arginine, 1%, 4 mL† Biuret test solution, 10 mL‡ Casein, 2%, 5 mL* Copper sulfate solution, CuSO4, 0.1 M, 4 mL§ Cysteine, 1%, 4 mL† Gelatin, 2%, 5 mL* Hydrochloric acid, HCl, 3 M, 6 mL§ Isopropyl alcohol, (CH3)2CHOH, 2 mL§ α-Naphthol, 0.1% in ethyl alcohol, 2–3 mL‡ Nitric acid, HNO3, 3 M, 7 mL‡ Silver nitrate solution, AgNO3, 0.1 M, 2 mL§ Sodium hydroxide, NaOH, 3 M, 10 mL‡ Sodium hypochlorite (bleach), NaOCl, 5%, 30 mL‡ Sodium nitroferricyanide, Na2Fe(CN)5NO•H2O, 2%, 5 mL‡ Tyrosine, 1%, 4 mL† Water, distilled or deionized Beakers, 50-, 400- and 600-mL, 1 each Boiling stones Erlenmeyer flask, 125-mL Filter paper and funnel Hot plate (may be shared) Pipets, Beral-type, graduated, 20 Stirring rod Test tube, medium, 15 x 150 mm Test tubes, small, 13 x 100 mm, 7 Test tube clamp Test tube rack Thermometer Wash bottle *Protein solutions †Amino acid solutions ‡Testing solutions §Reagents for protein denaturation Prelab Questions
Safety PrecautionsBiuret test solution contains copper sulfate, which is moderately toxic by ingestion and sodium hydroxide, which is corrosive to eye and body tissue. α-Naphthol is slightly toxic by ingestion, inhalation and skin absorption and is a body tissue irritant. α-Naphthol solution contains ethyl alcohol and is a flammable liquid—avoid contact with flames or other sources of ignition. Hydrochloric acid, nitric acid, sodium hydroxide and sodium hypochlorite solutions are corrosive liquids and can cause skin burns. Sodium nitroferricyanide is highly toxic by ingestion and inhalation. Do not allow this solution to come in contact with acids. Do not heat the solution. Dispense and use sodium nitroferricyanide in the hood or in a well-ventilated lab only. Avoid exposure of all chemicals to eyes and skin. Follow instructor guidelines for disposing of test solutions. A solution of sodium hypochlorite may be used for oxidizing sodium nitroferricyanide solutions in Part A. Sodium hypochlorite and sodium nitroferricyanide will generate toxic gases upon reaction with concentrated strong acids. Wear chemical splash goggles, chemical-resistant gloves and a lab coat or chemical-resistant apron. Wash hands thoroughly with soap and water before leaving the lab. ProcedurePrepare a boiling water bath for use in the xanthoproteic test and protein denaturation. Fill a 400-mL beaker half-full with water, add a boiling stone and heat to boiling on a hot plate at a medium setting.
Xanthoproteic Test
Sakaguchi Test
Nitroprusside Test
Part B. Protein Denaturation and Salting-Out
Effect of Heat
Salting-Out
Student Worksheet PDF |